Gsnap -

| Feature | GSNAP | STAR | HISAT2 | | :--- | :--- | :--- | :--- | | | DNA & RNA | RNA-seq | RNA-seq | | Speed | Fast | Extremely Fast | Fast | | Memory Usage | Moderate (~8-16GB for Human) | High (30GB+ for Human) | Low (~8GB for Human) | | Splice Awareness | Built-in | Built-in | Built-in | | SNP Handling | Excellent (probabilistic) | Standard | Standard |

Here’s a feature concept for — positioned as a smart, gamified screenshot & screen recording tool for developers, designers, and product people. | Feature | GSNAP | STAR | HISAT2

GSNAP outputs standard (Sequence Alignment/Map) format by default (or BAM if specified). * Keywords

© 2014 Caboche et al.; licensee BioMed Central Ltd. * Keywords. galaxyPasteur gmap. * Application Categories. Command-line tool. * NIAID Data Ecosystem Discovery Portal (.gov) Command-line tool

Ensuring that reads containing non-reference alleles aren't unfairly discarded. 2. Advanced Splicing Detection